Seamless NGS is a software platform for automated analysis and management of next-generation sequencing experiments. It provides easy access to advanced bioinformatics protocols for the detection of SNVs, InDels, Copy Number Variants and RNA Fusions.


Multiple Applications

Investigate genetic variations for NGS-based panels from various kit and machine manufacturers.

Medical Guideline

Comply with S1-Guideline by the German Society of Human Genetics (GfH) during analysis and quality control

Local Installation

Deploy the software locally, allowing usage with stringent regulatory compliances and security requirements.


Save time and effort

The software is optimized for fast and automated routine usage in diagnostic labs. Our end-to-end software moves you rapidly from data generation to interpretation.

Stringent Quality Control

Seamless NGS gives you all measures to assess the quality of each sample quickly and intuitively. Tracking of quality of certain panels/protocols over time allows you to evaluate your wet lab efforts.

Clear Result Presentation

Comprehensive information about DNA variants, their annotation and effects is directly available. Various sorting and filtering options enable fast result interpretation.

Interactive Data Exploration

Intuitive sequence visualization has been tighly integrated into Seamless NGS to help with reducing false postives and increasing certainity in problematic variant calls.

Streamlined Variant Interpretation

Assign own pathogenicity classifications to easily keep track of observed variants. New variants can be ranked according to historical classifications and include a complete audit trail.

Feature Overview

Push-Button Analysis High Data Security and Privacy
Up to 50% Time Saving per Sample Enhanced Quality Control
In-House Variant Database Clear Visualization
Easy-To-Use with Large Gene Panels Highly Customizable
Professional Bioinformatics Support Following the S1-Guideline (by GfH)

Customer Feedback

The BRCA1/2 analysis workflow in the Seamless NGS software convinced us with its ease of use and the fast evaluation of the detected variants. We participated successfully in a QuIP round-robin test, achieving a full score (20/20 points), thus confirming the high accuracy of the genetic testing software. Therefore, Seamless NGS is a qualified data analysis tool. With its help, we could successfully establish NGS-based BRCA1/2 testing in our routine diagnostics.

- Dr. Tina Unger, Institute of Pathology, Leipzig University Hospital

Our customers include

Universitätsmedizin Rostock
Agendix Dresden
Uniklinikum Leipzig - Pathologie

Discover the Seamless NGS Software

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ecSeq Bioinformatics GmbH · Sternwartenstr.29 · 04103 Leipzig · Germany

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